ChIP-seq Workflow

ChIP-seq with Bioconductor in R

Peter Humburg

Statistician, Macquarie University

ChIP-seq with Bioconductor in R

ChIP-seq with Bioconductor in R

ChIP-seq with Bioconductor in R

ChIP-seq with Bioconductor in R

ChIP-seq with Bioconductor in R

ChIP-seq with Bioconductor in R

Summarizing results

Creating a heat map

heatmap(read_counts)

ChIP-seq with Bioconductor in R

Summarizing results

Creating UpSet plots

upset(fromList(peak_sets))

ChIP-seq with Bioconductor in R

Let's practice!

ChIP-seq with Bioconductor in R

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