Interpreting Gene Lists

ChIP-seq with Bioconductor in R

Peter Humburg

Statistician, Macquarie University

ChIP-seq with Bioconductor in R

ChIP-seq with Bioconductor in R

Finding enriched gene sets

library(chipenrich)

chipenrich(peaks, genome='hg19', 
           genesets = 'hallmark',
           locusdef = 'nearest_tss')
ChIP-seq with Bioconductor in R

Let's practice!

ChIP-seq with Bioconductor in R

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